PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp1324s0008.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 248aa    MW: 26833 Da    PI: 6.2889
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp1324s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-1980128355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          y+G+r+++ +g+W+AeIrd +    +  r++lg+f t+eeAa+a+++a+k+++g
  Kaladp1324s0008.1.p  80 YRGIRRRP-WGKWAAEIRDSR----KgFRVWLGTFPTPEEAARAYDEAAKRIRG 128
                          9*******.**********42....249***********************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.76279136IPR001471AP2/ERF domain
PfamPF008471.4E-1479128IPR001471AP2/ERF domain
SMARTSM003803.1E-3579142IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2279137IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-3079137IPR001471AP2/ERF domain
PRINTSPR003676.2E-118091IPR001471AP2/ERF domain
CDDcd000187.24E-3280137No hitNo description
PRINTSPR003676.2E-11102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MCGGAVISSL IGSNRGPNLI SHDLWHQLDP SSDIFGFNSA TNSKTPITAA DQNPNEKKSE  60
KGANGAAGAD KPKRVRKTAY RGIRRRPWGK WAAEIRDSRK GFRVWLGTFP TPEEAARAYD  120
EAAKRIRGDK AKLNFPEKRL RVEPVESTHP SYEPVGPVLT GAGDAGLICG RNQGYVVGSG  180
LDNTISDLES FLGLNDGSGS TDLKGLFDPV DLDWMDGLVM TENSPFDEPY GVNPDRSLLC  240
LNFDVQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1980146670ATERF1
3gcc_A2e-1980146670ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17286KRVRKTAYRGIRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455978.12e-51PREDICTED: ethylene-responsive transcription factor RAP2-3
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.14e-42ethylene-responsive element binding protein